NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207714_1109821

Scaffold Ga0207714_1109821


Overview

Basic Information
Taxon OID3300027580 Open in IMG/M
Scaffold IDGa0207714_1109821 Open in IMG/M
Source Dataset NameMarine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameAlviso Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.474067Long. (o)-121.973033Alt. (m)Depth (m).075
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066493Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0207714_11098211F066493GGAGGMSESREFDDGLIDVADELVSEYSAEGAIDRLQRRRESTRSDELEARCLEAIAYIRREVQDNES

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