NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209874_1100234

Scaffold Ga0209874_1100234


Overview

Basic Information
Taxon OID3300027577 Open in IMG/M
Scaffold IDGa0209874_1100234 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028690Metagenome / Metatranscriptome190Y
F094559Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209874_11002341F094559GGAGGMRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGPTHAVDA
Ga0209874_11002342F028690N/ASCDPRCRACRIHGRPFYSHGDLQYLEHGTGPLAAELERLWRAKGTMKGSTAPHAAGHDGDGWQALPRGAAGQAPRRPHALPVTELYYPGLQDPPGHHGRNASSGQ

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