Scaffold Ga0209003_1017548

Overview

Basic Information

• Taxon OID: 3300027576
• Scaffold ID: Ga0209003_1017548
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026517	Metagenome	197	Y
F050560	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209003_10175481	F050560	N/A	VVRIRNRADGMKTIDALIDFFDRLATPRMTDMQIEIIEKKLLNLAIEGDREAARHHADLSLSRLSWERTRSPERRQDFIH
Ga0209003_10175482	F026517	AGGAGG	MKRQITGAILISLGLGLFWQALAEGLDCQTLCRKSYVQCSDLAHKSINPIRSLKICNDAFHRCLGNCVN