Scaffold Ga0209525_1000030

Overview

Basic Information

• Taxon OID: 3300027575
• Scaffold ID: Ga0209525_1000030
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56412
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011237	Metagenome / Metatranscriptome	293	Y
F016865	Metagenome / Metatranscriptome	244	Y
F064049	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209525_100003041	F016865	AGGAGG	MATKGLLLGLILVGVTASAASAQDTASKPKAEVRSITGCLSKGDSADEFLLTAKDGSTWETHSNTAVNLADHVGHTVTLKGVVANAKAHNMKEDAKTAATDAGVKKTDTEHGHLKVTSLKMVSESCSK
Ga0209525_100003050	F011237	GGAGG	MNIAEFRNRQNCAIYLAAVALVVALASFGRSPNPSANESNDPWKNERQYPPLVFTSNSWLDCSISSSANGRQVMTTTSGQGFTFDATMLPLQNGKLQLRGQTGMMYKFESFPTAAVKAHFTGLGDGMITEMKSEVEVAVARFKQPAGAGTAIHFTAADIAADSAYVEFTGVFVRTSDQKPFPFRVLFGRVQDGSGLVVPASAAPDTTILSKRVTLGSVRSPVIVTTALYEAEDNVAKLKL
Ga0209525_10000307	F064049	N/A	MTAASAEGTEKEQLNFLATRLGELNNTASQVLIFLSFAIVAAVTFLAVNPGPAAKGAIHWALRWWIGAIFPTVIGILPLKEIRDRDVLWYRALLWVRFVLMWSAIACIFVGAIWFFKAV