Scaffold Ga0209525_1000006

Overview

Basic Information

• Taxon OID: 3300027575
• Scaffold ID: Ga0209525_1000006
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102287
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (82.20%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005540	Metagenome / Metatranscriptome	397	Y
F041899	Metagenome / Metatranscriptome	159	Y
F043130	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209525_100000640	F041899	N/A	MLISILILVVSLAALIQFAAFTWRAAFLTVATADLPEDRDKYITLNDFEEASAYERLCPELGVRVSTKLGSVSAYNSLLQFAISVGDSILPPAAGWAQREMALCTRYATVTLARRLERNQIVAAELSSF
Ga0209525_100000674	F005540	AGGAG	VDFVTKFEKALRTRYHHLKTEIAKIEHLIDAFEKGAKRGAKGTSRGKLTAAGRKRISMAQKARWAKRKKGT
Ga0209525_100000685	F043130	N/A	MLHRPRLMPLLFGVILCITSASCRQKANLHDRIIAAETSKYCCLPDACFNPHVLAVETGYDVTTFLGSKPQHAHVAAKDLAKYLQALPMRVWPRGPSIAISPTDDVIDQRAVTQNLDAAQQVCRPMGLQVQVLPGG