NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208454_1000297

Scaffold Ga0208454_1000297


Overview

Basic Information
Taxon OID3300027573 Open in IMG/M
Scaffold IDGa0208454_1000297 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32725
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9077Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003830Metagenome466Y
F008593Metagenome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0208454_10002971F003830GAGMADRRRVRVSRMPIDDDTLKQLLRIDDELMQLCKWLNEKRDTEVSSRLIPLVDDLTHILLEAGKNKLH
Ga0208454_10002972F008593N/AMENYRGYFIDGKALLVHPFSLDWCVGGSVLRSGCLGSIVEVSRFQLPSFTVSMKKLAEWFGLELARIVAECVSPR

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