Scaffold Ga0208454

Basic Information
Taxon OID	3300027573 Open in IMG/M
Scaffold ID	Ga0208454_1000011 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208454_1000011 Open in IMG/M

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	280423
Total Scaffold Genes	272 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	193 (70.96%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

280423

Total Scaffold Genes

272 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

193 (70.96%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8898	Long. (^o)	-106.9077	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8898

Long. (^o)

-106.9077

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F023552	Metagenome / Metatranscriptome	209	Y
F030005	Metagenome	186	Y
F065506	Metagenome	127	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208454_1000011200	F023552	AGGAG	MASNYEGRDGAGDLVARGPDTAESGSGPSLRSLKQELKTLRNRSMPRQTKKPTKLERARKLHDAVTSLVQELKNGEFTALSSRPGPVTIIGPEIDDPKTDGRIGHVRESLGIYIQRLSVKDNFFQRPPFDHMTDPIYRRLIRDFIEGAAMPESKIAAIGWAGGVRSLSDANIRYSIIDGLQRLYCFLIAILLVWRREQLVQDGIVPEDGWNFVAESVKKLGDPNSATEALLQRVVRYEIFYGIGLAGLLHYMVTFNSSQRRMSLRVQLEIMKRPLIEHLKVEGIPIWEDLGKMPGEQRPKDKFLASDIVMATQAFITHNAHVTTAVETERFLDENQPYLDNIGDITDIVKTLKRISAEVHPKLAQAYESDAAFRCIMMHGDPFLFGFVAACGYVRNRGGMEILDKALDRLVQEFDRRGDDPLDIESYQQALAVIDASRGKDARRLVDDTVRRFFLGVTMELDWLDTACQLSGTPAR
Ga0208454_100001131	F065506	GGA	MTLDQGLTYSMPLEVYLHAAVVRGVLVTNQSRLSNYLVLREGEEVFSLKEATLESTDRKPIAVASDEYLVYMREVYLIADLSPTSQTQRTGMESFYVHKESTKALFSVGPYLLRGNIHLLPGAALHDLLVDKSQFIPVTDAILLDHQDIAPRTYLVNRNRLGFMTAISDGLVEF
Ga0208454_10000114	F030005	GGAG	MFRSRTAARLENPAPAAGLAVMEMKAVKYRITEVAGWVIVTPSGKAENNEPLRVRYLFRRWLTRQGIRVIANLKQLEQFGVWEVGVLTSFKREVDQRAGVLRLCNLNPELKGYFHHDRFAEQFELYEDLEGAMTGVRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208454_1000011

Overview

Ecosystem & Geography

Associated Families

Sequences