Scaffold Ga0208897_1002296

Overview

Basic Information

• Taxon OID: 3300027571
• Scaffold ID: Ga0208897_1002296
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7327
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → Acaryochloris thomasi → Acaryochloris thomasi RCC1774 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081896	Metagenome / Metatranscriptome	114	Y
F099115	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208897_10022961	F081896	N/A	LKYYTEQHKIKELTMEYKSYKFENEIHSLSSMPETAIEEIIRINKRITEHTWGVILEADKVSDINVYIAQMNKVQINARKANFFVVTDSEDILLKLNDAFNWMNKIFYIVPNTYNHNIDKQYRNSINFHCLKHLEKHVSTPGSMHMNMLKEIGGIQVTVPNQNRVFCFNSKRLVPGS
Ga0208897_100229610	F099115	GAGG	MENLISHLEGPNKHIINLIKLYSGEVVNSTSKWLSDRWFLRKTNFAKHLTCVEISPFKNTKDSNVFVGEKYLGHKVYKSLCDSSTSIDFLSILDPDISLEVLESIDFSKYTIKHFCIAINPVKTKDFKQNKKDIELFMKDKAKLIKQNRTELLY