NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208043_1004434

Scaffold Ga0208043_1004434


Overview

Basic Information
Taxon OID3300027570 Open in IMG/M
Scaffold IDGa0208043_1004434 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4967
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y
F092526Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208043_10044341F092526GGAGVLSEVQYRFLGRHREAVIVLLLTLLAFSVRLYRVDFNSLSEDEVAKWAAVQEYRHGHFVGVNSEHPMLPKMLAWASLTT
Ga0208043_10044343F004823AGGAGMYATKAINGVPAIQRDGQSVLSVCGQNWDFANWLCALLNELGDKSELLLNEQDWEWLNAIDRPFRRTVQHA
Ga0208043_10044345F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLGLSPMRRISERRKRRHGNYEERCSIKQSHPVEAI
Ga0208043_10044346F001596AGGAGMSWFHSSTAAVDARNYASPAEIVACFQDQRNVLSRLAFLITGDQATADQAVVQACDMTLQRNRPFRDWLFEWAKTATIASAISHGTEAIRICEAAYKDRRCPHVEHLSHGDAEELAASLDLILGTDTQTLIAELDPLCRAVLVLRAAIRSSIQDCALRLNVSRAAVVGAYCHAMTWFHDRHVKPVEETHYASHATQS
Ga0208043_10044347F010114GAGGMIIELNDDETRLLYNVLLEQAQEHFSYASTSEVAERLYKLATRFGRPVRELPSIRIA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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