Scaffold Ga0208043_1000785

Overview

Basic Information

• Taxon OID: 3300027570
• Scaffold ID: Ga0208043_1000785
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13005
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F005732	Metagenome / Metatranscriptome	391	Y
F038361	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208043_10007854	F038361	GGAG	VTEPAKNERAKSEAVEQKSIMLTVQVLWACHAWNTTPKEAAKQVVADLFDHLSRGGSVSVHVEASDGMEHTLEVTAMR
Ga0208043_10007857	F000175	N/A	VDEGRKRVLLIAASILAARKLAQYDSGARVPATVSAVADAVRWAERIMEEIDQRHPVKPAQQ
Ga0208043_10007858	F005732	N/A	MGKFSPTKQHGDCEEIANTSTAYGRRQRNWIDAHGAVPAGQVVDGSCGNKHCITLKHAYLRPRVEQPGKYRKIADRVHRLRVGQHFDVRGVGTDERSRNRFRSGLYAAARLDRVSVRGLPDGSVRVTKVGEWSSVRA