Scaffold Ga0209364_1022004

Overview

Basic Information

• Taxon OID: 3300027569
• Scaffold ID: Ga0209364_1022004
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2900
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 53.109679
  • Long. (^o): 8.847516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084807	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209364_102200410	F084807	GGA	MANVGTDTALHIPPVDMYTALMAAEAEAFPVTQYCHIKTCILHSTELRLSAIAPKPEVNSRMSL
Ga0209364_102200411	F084807	GGAG	MANVGADTALHIARVAVAATLTAVEKNAFPVTKYHHIKECILHSMKSGLSAVAPKPEVISRMSL
Ga0209364_10220045	F084807	GGA	MTNVGTDNPLHIPPVAMSTALMVAEGEAFPVTQYRHIKACILHSMELRLSAIAPKPKVISRMSL
Ga0209364_10220046	F084807	GGA	MANVVIDNALHIPPVAMYTALTAAEGEAFPVTLYRHIKACILHSMELRLSAIAPKPEVISRMSL