Scaffold Ga0209428_1002066

Overview

Basic Information

• Taxon OID: 3300027564
• Scaffold ID: Ga0209428_1002066
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5573
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001921	Metagenome	617	Y
F004913	Metagenome	419	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209428_10020661	F004913	N/A	IKLLKPWTEHKTNEEILQMVETERKIMDTVRSRQKRWLGRILRHDSLLRITLEGQIQAKKAYGRPRTILLDWLLKTEEGNISYEELKMSAQDRSRWSQ
Ga0209428_10020666	F001921	GGCGG	MTGKDGEMFMTRSFNVTPKTTEQHLTARSDKFVAYVTNNKRVFWTFCTIDANY