Scaffold Ga0209552_1058229

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1058229
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002387	Metagenome / Metatranscriptome	565	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_10582292	F000263	GGA	MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEELSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVRDENKKDGHI
Ga0209552_10582293	F037727	AGG	MRDTMERKNYMNKSSKFLEYMKIHRISLIQDNENQIQDSNDPDWNFLQGQIVATEHLLSVATDIMNDDLQGKGY
Ga0209552_10582295	F002387	N/A	EDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYLC