NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1037207

Scaffold Ga0209552_1037207


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1037207 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F031497Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209552_10372072F000441AGGAMRISDNYLNDQLNTAQALLWSGSLHEVDEAHNIIAKLISDRIEQVDPS
Ga0209552_10372073F000852GGAMATKREYLKSQGITVGVRGRFSGAAKVALAEAIAKGVTFTSEPINKAK
Ga0209552_10372074F031497AGGCGGMSKTQESKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRIMEMVVSVISEQAKMYTLYENRDNSLSEGLLLANELNECIKAYQESNQLNNLKLPSRIYKVNREEPPVRQGFGWREEKDPFN

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