Scaffold Ga0209552_1037000

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1037000
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1418
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F043926	Metagenome	155	Y
F058707	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_10370001	F004978	AGGAG	MITADTLKVLTTFTVRALYRAAQDAGYKGANFTACKFIGITNGGQFCYQAVFQVAGGTDSTKVFLSYDHEEDRVIADCQLTELS
Ga0209552_10370002	F058707	AGGA	MQVHFVDSGIAQDLGIWEVDCHSFKMDADDAPYALVSNPWVKDDSLRAEYNFYNNCLQWVVDIS
Ga0209552_10370003	F043926	GGAG	MIKWECQMFYKDKLYSGHYWSDELSLARARRKVAELQRYHPAMRFTLTDWQQGSIINLDKHTKDAPCKYTS