Basic Information | |
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Taxon OID | 3300027563 Open in IMG/M |
Scaffold ID | Ga0209552_1010565 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2861 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → unclassified Porphyromonadaceae → Porphyromonadaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F011208 | Metagenome | 293 | N |
F078389 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209552_10105651 | F078389 | AGG | MEESGASPGAIEKAKNGRPSPYSEEIGARIIEAVRGGLTLERAAEYVGLNPSTVQGWTERRAEFGRLIKKARREHELSLLRSVEAAGEKSWQARAWCLERIFQYAQPSARLQVSQDVTHGISGNLAQLLAGIAGKKKAQVIECKDVTPKTLLPIRDNSYCATDGAQTIVTPTPIKIPRPRKICMRRRKPRAESLAKYPPT |
Ga0209552_10105659 | F011208 | AGGAG | MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVGKVQRERWDKFRRERQTEAQAS |
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