NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1008336

Scaffold Ga0209552_1008336


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1008336 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3257
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F021481Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209552_10083361F021481N/ANKMSPILDVTKGRFYRLGDTFTTGKSGVTGAISEIVSIRPNLTKLRLDTGSGMRYAMVKIGK
Ga0209552_100833611F001125AGGCGGMGDRANFGFRDSKENIVFLYGHWAGHNMLQNLADAVQIAHPRWTDEAYATRIAISQMIGDEWRSETGWGISVNQLADNEHKVPIIDWKNKTFTLMEEDLQT
Ga0209552_10083367F000714GAGGMETTETVIPESYNSNLLVTYKVIRGYSDAEYATDKLTTIEWDLHNGRQSQKQVNLYLSKIDTVKDIITEAYADSDDQETLRSIAEALGIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN
Ga0209552_10083368F000311GAGMYFELTAPDRLSMERAYWDAEIIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLKESYWSDREATGYRER
Ga0209552_10083369F001043GGAGMSDYKDGFEDGYKFAREEMMEKLSEIDITDIDSWILDRLAEMIEGGAL
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Institute for Fundamental Biomedical Research
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