Basic Information | |
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Taxon OID | 3300027563 Open in IMG/M |
Scaffold ID | Ga0209552_1000186 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19842 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (13.95%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019993 | Metagenome / Metatranscriptome | 226 | Y |
F023325 | Metagenome / Metatranscriptome | 210 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209552_100018626 | F019993 | N/A | LLLPNFVIMKPEVKLLLVAGVGYVGFKAYQIYTAIKKLSYAPTGINFALNKSRGAIGGTLFVDIINPTAANIKVDSFTGTVKTADGTMIGDYKGQGLVLRPGVTNVRISWGSRSSLALVNLAIGISQGKYPVLTFNTVYNISGFPIPTSFKMDTKAYKPTFV |
Ga0209552_100018633 | F023325 | N/A | MRLVSPLIDYLFASGKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDTILNSKNNTITAIEIVDSVTNSNAPTVPATDPLSVAQARQGYFYFCNEKREVIAYVPLAALIRRLNAGKVQFLQFDDPVVWQNCFIQFDSLGTAITTANSVWLRVTYTPVEN |
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