Scaffold Ga0209552

Basic Information
Taxon OID	3300027563 Open in IMG/M
Scaffold ID	Ga0209552_1000085 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027563 Open in IMG/M

Scaffold ID

Ga0209552_1000085 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28253
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (68.49%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28253

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (68.49%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F006385	Metagenome / Metatranscriptome	374	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y
F029107	Metagenome / Metatranscriptome	189	Y
F034575	Metagenome / Metatranscriptome	174	N
F070104	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_100008511	F029107	N/A	MTLHALVTLDSTTATRLTPNGMHSGMDITIQNIHASAYVYVGGEGVTASDYGYRIAPGSAFSVELPGTNALYAITNVNGSAIAVLKTGLE
Ga0209552_100008533	F006385	GGAG	LILDNGTLIAIVIALAGSLSMMLVFWKQNIAQQKEIRRLQLTLRDERLKK
Ga0209552_100008540	F002515	N/A	MTTKKNAEELRRLMELRRSNAATYVKSKKAYTRKGNKCQSEMLQLINNEKGE
Ga0209552_100008549	F022197	GGA	MTQTIEDPTLYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDVEENVFLPELGEWYTK
Ga0209552_100008551	F070104	GGAGG	MLGYTETDIAVMTDAMEDAIKSGRLSSEVTDGLEKAMSFFDGLWSEGYFD
Ga0209552_100008553	F020910	AGGAG	MWSKYTFVCDPDECDALLEFTARDDYGFPRGSVEMTCPCGRKMAYIGYDDAWGPIFPVTNITPREVVKINTNPYN
Ga0209552_100008555	F034575	GGAGG	VNSTDLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIDAEEYSEDAMDSMARTEATGYLDALTEVYALTYAIAFAKEEVKNRKEILGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209552_1000085

Overview

Ecosystem & Geography

Associated Families

Sequences