Scaffold Ga0209552_1000009

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1000009
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76006
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (83.12%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F003408	Metagenome / Metatranscriptome	488	Y
F008245	Metagenome / Metatranscriptome	336	N
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F030095	Metagenome / Metatranscriptome	186	N
F051930	Metagenome / Metatranscriptome	143	Y
F070122	Metagenome	123	N
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_10000091	F000376	AGGA	MSEYQERAKDCKCCGKHVPLPTVLREYNGTVVCPTTFANILEYKRIWEAYGSRPMGSIRKHFSEYVQQLVEAGAPGEK
Ga0209552_10000093	F000369	N/A	MSELEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKEVLEHVDEWKSVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEILVGILKETTASCPKCKMDVAKKLSQITGIVEAIVIEDADVV
Ga0209552_100000934	F003408	AGAAG	MPEMVQTFKSMQKTEEEKRKFLALIQGVELNESSNENKEGSSFEDIRRRALGINASADDVVSLQGGLAAEAGFGVGAGLGYSIE
Ga0209552_100000937	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKDSFIFNAYDYYSDNLGKEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKILFTIYSTDVTEIYEIRNLMTDLFRRMDESAVDVNDQNRPSKLKFHSIHIVETSPIDPSIELKGFMSTDVILEVKYSRTTDKSGRFN
Ga0209552_100000938	F012456	GGAG	LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTRPRSLHHVYEWNKTGIPSSRLFHLYAIEMEGLSFRINYNFKLSKSSVPTKNKKQKKKYVFGNKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVRKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNLKMARALGVPMNIKKVQYSFTPGKIRIQADASLDAAFGGSL
Ga0209552_100000939	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGMISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDPITYREKITNVRDMNGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF
Ga0209552_100000959	F099281	GGA	MAIVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAIDYDGQPVYTVFANGVNTAATKFADGGDYSTDIYSMTFDSGTIS
Ga0209552_100000969	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLHNHIAKLQVRDTQGGKKLAFTLTEQDGLTISPVEGKIQISISADRTNKMFFPKSAYDLVLIDPSVNKTRLLEGYMTLNRSVTV
Ga0209552_100000973	F051930	N/A	MSEEGLVEKLLCPVDQSILFCNQTISDEVYLYCLSCEYKKALGLATYQNIVAQVDKNV
Ga0209552_10000098	F008245	GGA	MTEDKNTLQLISDITEFNDLHEYMQDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS