Scaffold Ga0209552_1000004

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1000004
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90141
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (60.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017825	Metagenome / Metatranscriptome	238	Y
F050978	Metagenome	144	Y
F095379	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_1000004114	F050978	N/A	MLCYSDYAMDTLNYIRLDCGSQQALAYKHQLDLDGLIVNQDYTWRYQKSVYNDFAWTDSEVSHVTFTFRNPVLATFYQLKWSR
Ga0209552_1000004132	F095379	N/A	MTKTYLFDSFLTVSKSKKLSKTGSRETNCSIIASTAGWYLVQLEKTRTRDTKQSLVFKRDPRKVSTLTTRIGQAHFSGHELVPNEYAKEARGLSMLISKQLLSMRFTRESAYSHVLAF
Ga0209552_100000473	F017825	N/A	MALLFCLISSIAHAQEIIDLQKPLKCSDAQVVMNYFVDIHKEIPVWVGKSVHDTHITLLINSATGSWTMIEYGAKIACVLGAGENRTDSKPKI