NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1000004

Scaffold Ga0209552_1000004


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1000004 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90141
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (60.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017825Metagenome / Metatranscriptome238Y
F050978Metagenome144Y
F095379Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209552_1000004114F050978N/AMLCYSDYAMDTLNYIRLDCGSQQALAYKHQLDLDGLIVNQDYTWRYQKSVYNDFAWTDSEVSHVTFTFRNPVLATFYQLKWSR
Ga0209552_1000004132F095379N/AMTKTYLFDSFLTVSKSKKLSKTGSRETNCSIIASTAGWYLVQLEKTRTRDTKQSLVFKRDPRKVSTLTTRIGQAHFSGHELVPNEYAKEARGLSMLISKQLLSMRFTRESAYSHVLAF
Ga0209552_100000473F017825N/AMALLFCLISSIAHAQEIIDLQKPLKCSDAQVVMNYFVDIHKEIPVWVGKSVHDTHITLLINSATGSWTMIEYGAKIACVLGAGENRTDSKPKI

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