Scaffold Ga0209735_1001018

Overview

Basic Information

• Taxon OID: 3300027562
• Scaffold ID: Ga0209735_1001018
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4856
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F007488	Metagenome / Metatranscriptome	350	Y
F084509	Metagenome	112	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209735_10010182	F007488	GAG	MKIRAYEESDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPRERWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDEWTPYCKRLEPTFAVVNGKGT
Ga0209735_10010183	F106044	AGGAGG	MPNLTYNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVTVTQTDNATISVVVTI
Ga0209735_10010184	F000781	AGGA	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASTPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0209735_10010185	F084509	AGGAG	MPSYGNVLPPVSVGFGESAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGVISVQFQTADTDIDAAYIQEGAAISNVNTGNVTRAEFPDVVAKFARILIATLPNNVTATAKISA