NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209887_1081874

Scaffold Ga0209887_1081874


Overview

Basic Information
Taxon OID3300027561 Open in IMG/M
Scaffold IDGa0209887_1081874 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F063438Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209887_10818741F003507N/ALRTDLAVMYACGITEVQVDRSQGHFVLPEVLAQFRSRLDAALMDALLAIQAAAAMDAGLVSPAHLVVDTFPSEQGSQRVNDAATLYKAKKKSSRSLCTSPLTARSRARR
Ga0209887_10818742F063438AGGVHLTAHCTVTGTALKAQAQQLQHDLAKIMRRFGRQCRGQGKVFVTLVRQTEKQLLETGQPMGLLARAAQAHVQSAAQLAEGQRERLDTKLKGALAAHHQIATQSRRLTHGKPLTQCKIVNAYDPT

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