NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209531_10094975

Scaffold Ga0209531_10094975


Overview

Basic Information
Taxon OID3300027558 Open in IMG/M
Scaffold IDGa0209531_10094975 Open in IMG/M
Source Dataset NameCubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029797Metagenome187Y
F071367Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209531_100949751F029797GAGMTDKNTLVLQSCTDAPRVEHCSSSETSVRSSDVSNEVITIKVEGEELHIKEEAEPIAISCSSIKDVPEVSPQTFHQYLRLPSVIMLYKYCLPAFPHK
Ga0209531_100949752F071367GAGMTHKNTVVLQSGTDAPRVEHGLCSEPSVWSSDDSIEVISINIESEEICIKEEVEPIALSSSIKNEPEVRTQTFLQYLGLPPVIMPFVCLPFHINQLPMVNGMVCIYLQIVLNSRVE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.