Scaffold Ga0209743_1033780

Overview

Basic Information

• Taxon OID: 3300027556
• Scaffold ID: Ga0209743_1033780
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2136
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000012	Metagenome	7108	Y
F096167	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209743_10337801	F096167	N/A	MSGNFGYIIIIRRLIMRAMSEYITESEARAVAKWDVGSCLRMVHKTKQVGFEPVCESLHSWSISYGGWDFITNLGGTVAEGMPTLVSCYSGNIEQLLTGRVQGSRGLIRKQK
Ga0209743_10337802	F000012	GAGG	MSLKLVPFESLGAVFYSPFIVTMAISVAVCEIFGVKEWRDLENHVRGRSMSLKIAPFDRPYATFCRSAVVNIALSCAVFELFDVE