Scaffold Ga0209831_1004839

Overview

Basic Information

• Taxon OID: 3300027554
• Scaffold ID: Ga0209831_1004839
• Source Dataset Name: Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10380
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Maine, USA
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013269	Metagenome	272	Y
F023776	Metagenome	208	Y
F036067	Metagenome	170	Y
F073006	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209831_10048393	F073006	GGA	MLQSINVLFMHVQLPWADNVSEVLDFVGEPCALFQVQGNPGFAETVQNRVNVLDVLFRVREEDDDIV
Ga0209831_10048394	F023776	N/A	VIRSDEEPLPVEELPQPEDSPHDAEAFALRAGVVFLCSSESSAPISDRMKQFARFLLEEGTPDLVGTCFNIDDELPIGLWQGKYRWAQ
Ga0209831_10048395	F036067	GAGG	MRRRLRLSEYTFDMVYKPGTSHHLPNFLSRASTVAPTEDIHEDIPCLALADTANGLRTGWYRGTDTPEPVEFDDVIEAQQAHNYYVEMSTRMERGTAKAFFRTQHHALYRRTP
Ga0209831_10048397	F013269	AGGAG	MVTADAFFLPVNLNDELGGIRIRVNDHEVFNGLALQLGLRIVDGRTYVVTDLDVRIAGCDPVVEVTFVKLLRLTKRLDYERDLPAKAGHELAFSS