Scaffold Ga0209982_1044636

Overview

Basic Information

• Taxon OID: 3300027552
• Scaffold ID: Ga0209982_1044636
• Source Dataset Name: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 710
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: Joint Genome Institute, California, USA
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037792	Metagenome	167	Y
F101382	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209982_10446361	F101382	N/A	RSRAEVSAAKANVRASIPGVEAFYADHNTYSGLHLTKLQLSYDAGIKNVSVVRATAASYCVQSTVGQATWKKGGPSADITVNAC
Ga0209982_10446362	F037792	AGGA	MASQLRLHVLLPLAFLGLIGAAFGVYTMGKAPGGGNDSGVPLITTHPDKAKPKPATSEDWAKSLEAWCAGLDARYQKVDEPATLADFESAVGEYVEIWDSAQPAFIKLGVPNEKRRTALALR