Scaffold Ga0209338_1097208

Overview

Basic Information

• Taxon OID: 3300027551
• Scaffold ID: Ga0209338_1097208
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000012	Metagenome	7108	Y
F003653	Metagenome	475	Y
F094500	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209338_10972081	F003653	N/A	RMIGLPYGEKNYDDMLSRFHLIPERYGQTDGRTDRRTDRQTDRQTNRQIYYINIVRQYADAR
Ga0209338_10972082	F094500	GAGG	MSLKLVPFESLGAVSYSPSIVTVAVSVAVCEIFRIKKWRDLENQVRDEVIENGAVR
Ga0209338_10972083	F000012	AGG	VVPFESLGTVSYSPSIVTMAVSVAISEIYSVKEWRDLEKQVRGRSRSLKMALFDRPYATFYWSATVNIALSCTIFKFFDVE