Scaffold Ga0209338_1076228

Overview

Basic Information

• Taxon OID: 3300027551
• Scaffold ID: Ga0209338_1076228
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1938
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000163	Metagenome	1825	Y
F006725	Metagenome	366	Y
F008464	Metagenome	333	Y
F047351	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209338_10762281	F000163	N/A	DFWSAGHLRMAVVHLPINFGVDICIQSRVIDISLKFKMAAAIILDFQFL
Ga0209338_10762282	F006725	N/A	MASAAIQDGGGRHLEFLKNIHNFGLDKDILHQIIWEDASRPCGDDYMIKSRNRKLIRVTSSNECLKHMCVDLSDYKIYFNQIWHKTQIPHYQHAGMAKFIKTENPR
Ga0209338_10762283	F047351	GGA	MALMRLPVKFGADIFIQSGVIDIFSKIKDGCRRHFGFVWVSHGTTHEALFMVRTCTSCKNFVVIG
Ga0209338_10762284	F008464	GAG	MQTLTSVRRRGWSGRIASLPLSGGVFFSFFGFLGKATGRTVRPTWTNEGTKCVVPLKEVPFGSLNDVSLNFGGKIPQKLTF