Scaffold Ga0209338_1022853

Overview

Basic Information

• Taxon OID: 3300027551
• Scaffold ID: Ga0209338_1022853
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3234
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002668	Metagenome	538	Y
F017238	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209338_10228533	F002668	GGAG	MSNDVFNFNFIALLLSEILGGPKFTLGGPAPPGRPLAENFL
Ga0209338_10228534	F002668	GAGG	MSNGVVNFNFLAVLLSEILGGPKFTVGGQTPPGRP
Ga0209338_10228535	F002668	GAG	MSNGIFNFNYPSPLLSEILGGLKLTLGGPTPPGRPLAEKFLYPKRVLLNI
Ga0209338_10228537	F002668	GAG	MSNDVFNFNFLTLLLSELLAGSKFTLGGPTPPGRPLAEKYFYPKRILHNI
Ga0209338_10228538	F017238	GAG	MSNGVFNFNLLALLLSELLGGPKFTLGGPTPPWTPPSGEICVPKASISQCLTVFLISTF