Scaffold Ga0209338_1000670

Overview

Basic Information

• Taxon OID: 3300027551
• Scaffold ID: Ga0209338_1000670
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10621
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Cephalochordata → Leptocardii → Amphioxiformes → Branchiostomidae → Branchiostoma → Branchiostoma belcheri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004920	Metagenome	418	Y
F072815	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209338_10006703	F072815	GAG	MQRASGQIIHDLLLVELFDVKYYSNFEMWVRGHSRSLKVVPFESLGTVSYLPSIVTMAVSIAILEIFSIKE
Ga0209338_10006705	F004920	N/A	MSLISSTLHSTPLPWLPVLSSIEPPALRRKAATDSWPIQPDILSSPLLQLTSRKPLWLDLKPVDIKIRWRHNWKLAQVVNSHLVCNPTIWQLGFELPRQQCFLLNHSRTEQGHCGACRRKWRLTDTDLSPCGESQTMFHIVRSFPLTKLYSILSRLHSADEDAVSWLTSYFS