Basic Information | |
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Taxon OID | 3300027548 Open in IMG/M |
Scaffold ID | Ga0209523_1024651 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1189 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Davy Crockett National Forest, Groveton, Texas, USA | |||||||
Coordinates | Lat. (o) | 31.11 | Long. (o) | -95.15 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F077144 | Metagenome / Metatranscriptome | 117 | Y |
F084560 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209523_10246511 | F077144 | N/A | MARKKPLSRILVSENTLSLKECAFLIELYDRYAELSPQRDCSGRPLLHYYTLRDVDSESASRVHGVSLRCKEKIEVGLRSPELIIESVFLACLWPGDSHIPHADSERKEHGRWLP |
Ga0209523_10246512 | F084560 | N/A | MIHVPSSLLARHSSVEALAERRDRCKALRADLAPRYRIVVSAENSPYLAWQAKLFHFSCVSRVGRSPIVIVHDCGSKWRRDFQELADAGAIVSRAPSYRITSNGDDYLCRNIAGTLLHAAELCSAKDEFIVFCDPDMIFVRQPDFSRSLSGEYYGYVNYDRKPVRRAAKKIGIRLEMLDRQKRELCCGPPYVIPVAAAKQLAEAWLRAIDEVSPREWDDVMGAFGLAVVKLGLRITLTHMMNHNYWPNAMVNRDVIHYCYGDKTWNKRSYFTTRQAQK |
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