Scaffold Ga0209864_1008074

Overview

Basic Information

• Taxon OID: 3300027547
• Scaffold ID: Ga0209864_1008074
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033352	Metagenome / Metatranscriptome	177	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209864_10080743	F072095	AGGAG	VTRDLEKEGVLPASASQSYGSAQLSQTTALIDLQVKNRELRNRVEKIEDILKGLIEKQGASL
Ga0209864_10080746	F033352	AGGA	VSEFRLIENIEVLACRNSAERVVKALNRGEVQQAKDLARKHEIAWHVTDREFQTLNQPHRTNDFCDDE