Scaffold Ga0209008_1000369

Overview

Basic Information

• Taxon OID: 3300027545
• Scaffold ID: Ga0209008_1000369
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16215
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F037323	Metagenome / Metatranscriptome	168	Y
F039385	Metagenome / Metatranscriptome	164	Y
F080346	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209008_100036912	F080346	N/A	MDEGRKKLIYRVAGMFLVRRSAGLDRRPARENAFRDAIDNVVERMRRVDARFPAPGK
Ga0209008_100036919	F000626	AGGAGG	MPIVKKAPGIMTREVKLEEPVNELLEDYARFIESNPDHVVNAVLKKVLWRDQDYRKWRAARRTPQPGADKAQPVEVRGRA
Ga0209008_10003693	F039385	AGGAGG	MTNEQTKALAAVRAAFVASETTGLTEAEIGKAAVTGLVLPEVKSGRPPGNYNPIADGPDKQKGKAQHG
Ga0209008_10003699	F037323	GAG	LPVLARFVENGKVSIRLGPVADVKDWLNNYQAFEKTPIVTIDAGSVRLVGTELQFDCGLDDYAA