NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209008_1000002

Scaffold Ga0209008_1000002


Overview

Basic Information
Taxon OID3300027545 Open in IMG/M
Scaffold IDGa0209008_1000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)310709
Total Scaffold Genes284 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)222 (78.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028889Metagenome / Metatranscriptome190Y
F040747Metagenome / Metatranscriptome161N
F064947Metagenome / Metatranscriptome128Y
F066963Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209008_1000002113F040747GGGGGMSNLFTTATTVTTEQDAQVEKRLWQAVIVSTIQEWISGPLRYKRIAEEYLFQDRSDFPMVCQSAGLDVDKLRQQLTRLRTQANPLGKIAWE
Ga0209008_1000002139F066963GAGGMHTFEYAITTKASPSLTWEIYTNWKMWHTFANIYGRLHWQHGEPWSIGSRMEIEILKPVKVVIDHLIVNCRRGRDLGWIDRALGITLHQWVEFEEHHSGGTYVRTWGEIKPARVAVAGRTAEYLVGVFTETWYENFRSLCDEFAEVGV
Ga0209008_1000002199F028889AGGAGMEPIGLVAVILSFSVPLTAIYAWYRVRKLRTEERLAAIAKGVAVPMADELPPHARSRKSAILLTAGGLGYLITFMLLARYESDAMQAAAFGAIPICVGLGYFLDAVLVRRDMHPSA
Ga0209008_1000002244F064947AGGAMDQAASVTKNPATFLHRDSAAQFQSSVEHPVVLVATTDPVISDNMRSLLQMYPLRTLWAKGVGEVGALLAKENVAACFCGFWLVDGTYRDVVRLLKRQPMEVPAIIVCEPACPNEYRDYLAALNIRAFDFICHPYRKTDLERILQATLSERAAAARLRGSMVDTMNVLETRAGLR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.