Scaffold Ga0209791_1046795

Overview

Basic Information

• Taxon OID: 3300027540
• Scaffold ID: Ga0209791_1046795
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000163	Metagenome	1825	Y
F006725	Metagenome	366	Y
F010583	Metagenome	302	Y
F023239	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209791_10467951	F010583	N/A	MLACDDIMPTGWTPAAARSTLEEWTRTFSRGQPCSCFRITVFYGVQAGQQKVCEWGPKIWKI
Ga0209791_10467952	F023239	N/A	MPASSFSFFGFFAKGTGRTVRPIWTNESSKRVDPLKEVPFGGLKDVSLNFGGKIRQKLKFWGRE
Ga0209791_10467953	F000163	N/A	MTSRELTSGFDFLSRGHFCVALLRLPMKFGADIFIQSGVIDIFPKIKMAAAAILDLFG
Ga0209791_10467954	F006725	N/A	MAAAAILNFGKNVNNFGPDKDILHQIIWEDAPRRRGDDHVTKSRNWKLIRVTSSNKALKHMCVDLSDYKRYLKQIWYKTHIPHCQHARMAKFT
Ga0209791_10467955	F000163	N/A	DLHLMASRELTSGFNFWSRCHLCMALLRLPMKFGADIFIQSGVIDIFPKLKMAAVAILDF