NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209424_1030495

Scaffold Ga0209424_1030495


Overview

Basic Information
Taxon OID3300027539 Open in IMG/M
Scaffold IDGa0209424_1030495 Open in IMG/M
Source Dataset NameNasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001390Metagenome708Y
F003076Metagenome509Y

Sequences

Protein IDFamilyRBSSequence
Ga0209424_10304951F003076GAGGMKYVNGRRTGLVTFCVETAFYNGLLKERYKGGIEVTGR
Ga0209424_10304952F001390N/AMRLTVEEHVFILESYLKTMSYAHCRQSFFKKIGILKVNITRAIEEVNERMLRKVVRNMVKRVDTCIGMNGHHFQHLP

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