NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209424_1017805

Scaffold Ga0209424_1017805


Overview

Basic Information
Taxon OID3300027539 Open in IMG/M
Scaffold IDGa0209424_1017805 Open in IMG/M
Source Dataset NameNasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1406
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F001642Metagenome659Y

Sequences

Protein IDFamilyRBSSequence
Ga0209424_10178051F000003N/AMLYREIIAVCSQIHTKHIKTLCGENVELLNVKLVVHIVTTGFQRVKSLS
Ga0209424_10178052F000003N/AMLYREIIAVCSQIHTKHINTLCGENVELLNVKLVVHIVTSGFQRVKSLS
Ga0209424_10178053F000003N/AMLYKEIVAACSQIHTKHIKTLCGQHVELLNVKLVVHIVTTGFQRVKSLS
Ga0209424_10178054F001642N/AMLYREIIAVCSQIHTKHINTQCGQIVELLNVKPGGACCNHRDLKG
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