Basic Information | |
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Taxon OID | 3300027539 Open in IMG/M |
Scaffold ID | Ga0209424_1000018 Open in IMG/M |
Source Dataset Name | Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21870 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (31.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Sterculioideae → Pterygota | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | laboratory colony in Florida, USA | |||||||
Coordinates | Lat. (o) | 26.0625 | Long. (o) | -80.2332 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F037468 | Metagenome | 168 | Y |
F050744 | Metagenome | 145 | Y |
F101419 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209424_10000183 | F037468 | GAG | MVVLLQNCFDLRSGELGLRATSSEVGNEVIHVQVEGVGEVTGGEDCEPMTSPLTDAEVGFMSPDCVACFIGIQNCLSVSI |
Ga0209424_10000184 | F050744 | N/A | MTGHINGMLVLQSCTDSLQVLPGSSSETFRTPSDGTCDVGNTAVQQDVLVEEGFMAVNEEVPISIKQEEIPEDISFPEIKPEPNEVSYECVYVCY |
Ga0209424_10000186 | F101419 | N/A | MTEPLTLPTAIELAQTKSKEPQAMNNTIPNLTIIYCSETTEERNRTDDDKHNP |
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