Scaffold Ga0209734_1001920

Overview

Basic Information

• Taxon OID: 3300027535
• Scaffold ID: Ga0209734_1001920
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3495
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209734_10019202	F004186	N/A	MLTAACGVPTPAALTANDVLAKPQKSDLKDAHFTVTGKITDTSTGTTVQLVGDGALAYKPKLAGRFQFTTDVGGQTVTIKEISVDGTNYGLTPSSPKWVATKSTSGIDPSAFAGASDQKYVGEENLPQGKAWHATAKDKDGNAFDAYIREKDGYPIKYVETQSGGQNITLTFDKYNSGETITAPAADQIQAG
Ga0209734_10019203	F004003	N/A	MRLAAAMVAVGVLAACGGPGTPLGPPSAKDILSKPLQGNLKDAHFLVSGKFVSPSPGVSVDVNGDGALVYKNPGAGRFKFETMVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTSSGLGRDSFSGASDFVYVGEENLPTGKSWHAKAKDKDGNQFDGWIRENDGYPVKYEITQQGNALVLNFDKYNTGESITAPPASQVVQG
Ga0209734_10019204	F004349	AGGA	VKTRTWFVLATSGLVFAGCSGTIPAPAKPPTGQEILAKPDTANVKDGHFTLVAHIVSGSVTFDATGDGIIVVKPQQASRFTMQTTIAGQSLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYLGEETLSQGKAWHVRAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDHFNTGQTVTAPPASDIQQ