Scaffold Ga0255125_1069590

Overview

Basic Information

• Taxon OID: 3300027534
• Scaffold ID: Ga0255125_1069590
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F011760	Metagenome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255125_10695901	F011760	N/A	IGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSMLDKMFEPYAITPVVESPTFLFEIR
Ga0255125_10695902	F004476	N/A	TTEEFVKQVMEFGQKDIVLSVTHSNGVIDIVVSPTMDAIEADVYHFLNDETELKYTMPIKSLTASYISSLSLTSAIHTYLSEAFKIADIFARTTRQSTDYAK