NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255125_1058529

Scaffold Ga0255125_1058529


Overview

Basic Information
Taxon OID3300027534 Open in IMG/M
Scaffold IDGa0255125_1058529 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045757Metagenome / Metatranscriptome152N
F082697Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0255125_10585292F082697N/AMDINNLDEEQIQELQKQFEENRKIILSMDPEEFLERIIKLHDSTDVILEGYDLSTEVSGGQGISMAGIIRLRNALMDSVEWITNNLTEEDSEEEL
Ga0255125_10585293F045757AGGAMRKVLAILGLFFLTTSSFAYQEEKKKEPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKVKIPKFQIWEKNFDDTKFLLEKFLNVQFDTDEKKSYYMVKKK

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