Scaffold Ga0209968_1081371

Overview

Basic Information

• Taxon OID: 3300027526
• Scaffold ID: Ga0209968_1081371
• Source Dataset Name: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 583
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: Joint Genome Institute, California, USA
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003416	Metagenome / Metatranscriptome	488	Y
F040874	Metagenome / Metatranscriptome	161	Y
F053504	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209968_10813711	F003416	N/A	GSSGQRSLKPLHLIVIMDTLTFAISQSEESDSTAERRWENEGGNPGQLQQLPCDDRKENATTGPAQGALKAFRYKVNRTCI
Ga0209968_10813712	F053504	N/A	MRDAEVAYAIHPIVLKYLLTVEETTKALLACGVSRAANVARISTGSFLINKYATNRPTKQRDLFQAT
Ga0209968_10813713	F040874	N/A	MQPTVQQSSAIYFKRHKGSKSRAALFRQLRASPANQTHDVKQPTFGNAHIGQGLR