NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1041983

Scaffold Ga0209384_1041983


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1041983 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031151Metagenome183Y
F089161Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209384_10419831F031151GAGMIEHFKKFNDYGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSSAPAERGKAVESGLNMILQGVSLEEASEKTVAEFDGNCIGMTDPKVELERANLVPLLELGASKFKEHAFQWDLLGYQKKVEVSIKGIPFIGYTDFHFEDKKTKEDFFIDLKTSKTNPLQMSTSHAMQQSIYHKATNARQMLWYLKTPTKTKAPEFTQLELASYDHHMKICEHIVSVMGNFLETVNSPEDIKMALIPNPDNWIWKEETVLNARKEIWGY
Ga0209384_10419832F089161AGGAGMSDRYNLSDELSQSEEIETEELQQSAISKHLKDICVMGKLVFALDEYMLKFGRVSNVHDQCFDLKVQVLENKKNLQEWVDKI

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