Scaffold Ga0209384_1016117

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1016117
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2482
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F007537	Metagenome / Metatranscriptome	349	Y
F017556	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10161172	F004162	N/A	MGTIQNITTLLKEKQKIEKEIEKLQNLCQHPTKSIKYVRERLDSTIMVIRYVCDGCSLIIGIPNNDNLQNFLKQ
Ga0209384_10161175	F017556	N/A	MSNSKFKAGQAVSFPLMGTVGSKARKGGTIAKVEQMYELKEENKRFYPNGVCRGELTTIKELSKGESKGYAYVVKTIQPKGFHPETITVEEYKLKPSTKKMVLDLYTLQA
Ga0209384_10161176	F007537	N/A	MVLGVVFTSCQKEEFEIDTNYQFKMTGRTSQDINDYYHISINPSLNQQSLHRFGAYVTNVDKWNLPTQVIWRCDAFWYTPDTLGHTYIEIGNVPTGESVWSWENFAVTGYGGMTVPIVNGTSYADPSVDSAFCMMAPIGAMIGDTVTI