Scaffold Ga0209384_1007292

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1007292
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4238
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008385	Metagenome	334	Y
F032444	Metagenome	180	Y
F047918	Metagenome	149	Y
F072752	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_100729212	F008385	GGA	MPPIKTNIYGDYKVCIKCKNHADVIEGTKNYCVECWYLHINGKSIKEADQEIKEEERFKDKKXETY
Ga0209384_10072924	F032444	AGGA	MTKFKTKIQYVSWNDSIVGSNKKADIKKTKLENQGYILKATQAGLFSGLMIYENTNYKKG
Ga0209384_10072925	F047918	AGG	MIRIKQIEGTFKTCYTLIDDATDKNVGLAKGKNWLIKRQAWNLCNNKDYLTNHKNTGHYNKITKCWFFDNDIENFMDEGNKNIEIAITTRLNNNQ
Ga0209384_10072929	F072752	AGG	MKLKYRIFKYIKECLGIEKQDNSLIELNRTEVVDLPEDLVINLNNEEGEKNGKK