Scaffold Ga0209384_1007255

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1007255
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4256
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008697	Metagenome / Metatranscriptome	329	Y
F017908	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10072557	F008697	AGGAG	MANTAKKTSPKSASKKAVVKSVELVVTDQELTYDDIWHFVQTQAGGNEANVKIVPLDNVDLKSDAPVPFGYGGKAGGVRQIIQDLMLRGVEGDVTLKAVLTKAAPLGHSRKKPVCLHALLHGGYSPSSKYWMTPFVKLVVQA
Ga0209384_10072559	F017908	N/A	MALNKNQAKAKKANPVAPAPVKVVTLQNTGTAITNAQLWAFVNTHAAGSLHNVQVKPLANVNLNAAQPVPFGFTGKGTGVRATIQNWLLNGVNGNNSLAAILNAAKPLGHSTKSPVCLMAMLNGGYSPSSAVWGTGYVQLVVQPQPTAKATA