Basic Information | |
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Taxon OID | 3300027522 Open in IMG/M |
Scaffold ID | Ga0209384_1000608 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21743 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (42.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F077814 | Metagenome | 117 | Y |
F079236 | Metagenome | 116 | N |
F092751 | Metagenome | 107 | Y |
F105934 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209384_100060829 | F092751 | GAG | MAQRGRPRSKPVKKWNPRYSKTAVRVAIQNAFMDNPEVGMMMNQNKFTSTILQSCDTWAVNDGQTPPE |
Ga0209384_100060831 | F105934 | N/A | MSNNSFKNLQNKLLQLKKEIEPDEPKRRVEALRYIDVLCSLVNDSYDPLSTGDYMFIKTLTDSIHEVKYFGGFTKDSKERLRVIEKRYNYIHEEDRTNIE |
Ga0209384_100060839 | F077814 | N/A | MSTVSQEAECQRCDYEHGYHEFQTRTMEDYFMCPRCGHQVRYVVDNWDDSKYKSGKKKGQKRKTWKPKYRTETIVPVASYTLKEKGALGKQLGPVPTDEDLVNFKLNVVERSTELSVAKLTYLCAEGQYLGKWVEEDLLENRVKLLK |
Ga0209384_100060841 | F079236 | N/A | MPKKTDNRIGVMQGGLHTHPREQRYGNLWGHIDFSPREGVRGDGKDGYNNKTIGELSIGNYKVALTWTECTKIIEAIANGKEAFKTGKALDIV |
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