Scaffold Ga0209384_1000484

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1000484
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25038
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (24.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023454	Metagenome / Metatranscriptome	210	Y
F045198	Metagenome / Metatranscriptome	153	Y
F089439	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10004842	F089439	N/A	MKGNIFICLNEATYKGLIPKELEGNYAQKVYDLDDDLVEVIPTTFEDVGVDNRVKFGSVIEFKIKNKRYFVLELDCSWLGGEVSALLALGNSLEYPSNCLMTNEEAMALIAANTDNE
Ga0209384_100048442	F045198	N/A	MKLTAEHIEQIASYMADSLEDHLDTAFWDGSARVLDDLDVDYEDIGDISDEDCEAIVLETRLMFAPKKDRS
Ga0209384_100048448	F023454	N/A	MSEREIDHMLSIGYWIQVSPLANAGSGWVCGVYKRGKKTGNWITEVSRTFDHPYECYNWAEEEIYQLLHNTK