NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1000484

Scaffold Ga0209384_1000484


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1000484 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25038
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (24.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023454Metagenome / Metatranscriptome210Y
F045198Metagenome / Metatranscriptome153Y
F089439Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209384_10004842F089439N/AMKGNIFICLNEATYKGLIPKELEGNYAQKVYDLDDDLVEVIPTTFEDVGVDNRVKFGSVIEFKIKNKRYFVLELDCSWLGGEVSALLALGNSLEYPSNCLMTNEEAMALIAANTDNE
Ga0209384_100048442F045198N/AMKLTAEHIEQIASYMADSLEDHLDTAFWDGSARVLDDLDVDYEDIGDISDEDCEAIVLETRLMFAPKKDRS
Ga0209384_100048448F023454N/AMSEREIDHMLSIGYWIQVSPLANAGSGWVCGVYKRGKKTGNWITEVSRTFDHPYECYNWAEEEIYQLLHNTK

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