Basic Information | |
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Taxon OID | 3300027522 Open in IMG/M |
Scaffold ID | Ga0209384_1000385 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28962 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (41.94%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011256 | Metagenome / Metatranscriptome | 293 | N |
F018087 | Metagenome / Metatranscriptome | 237 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209384_100038520 | F011256 | N/A | MVGKEIRMMSDMSLENIYGAVVMVAVGLVILLHPDKFRYSSKQIKHFISKYWWISVFVLLGYLTMGEWSNLFMA |
Ga0209384_100038525 | F018087 | GGA | MKKLLILLLLIPTLIQAEEFKLVCEGERVLTKSYSDISRIKKSIGVKVRKASIRAEDETYYNGKSARFEGNYVKNKDLITAWTVYTETPSKSSCSVVGHDLSINLIDETIYITKRETNECKKKGYFTNIDFIGKCKKQKLMAFEAFEAFEANETNEAPTNEMCDVDEGDIRNKGNRERKKCY |
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